Classes in this File | Line Coverage | Branch Coverage | Complexity | ||||
Terser |
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| 5.588235294117647;5.588 | ||||
Terser$1 |
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| 5.588235294117647;5.588 | ||||
Terser$PathSpec |
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| 5.588235294117647;5.588 |
1 | /** | |
2 | * The contents of this file are subject to the Mozilla Public License Version 1.1 | |
3 | * (the "License"); you may not use this file except in compliance with the License. | |
4 | * You may obtain a copy of the License at http://www.mozilla.org/MPL/ | |
5 | * Software distributed under the License is distributed on an "AS IS" basis, | |
6 | * WITHOUT WARRANTY OF ANY KIND, either express or implied. See the License for the | |
7 | * specific language governing rights and limitations under the License. | |
8 | * | |
9 | * The Original Code is "Terser.java". Description: | |
10 | * "Wraps a message to provide access to fields using a more terse syntax." | |
11 | * | |
12 | * The Initial Developer of the Original Code is University Health Network. Copyright (C) | |
13 | * 2002. All Rights Reserved. | |
14 | * | |
15 | * Contributor(s): Ryan W. Gross (General Electric Corporation - Healthcare IT). | |
16 | * | |
17 | * Alternatively, the contents of this file may be used under the terms of the | |
18 | * GNU General Public License (the �GPL�), in which case the provisions of the GPL are | |
19 | * applicable instead of those above. If you wish to allow use of your version of this | |
20 | * file only under the terms of the GPL and not to allow others to use your version | |
21 | * of this file under the MPL, indicate your decision by deleting the provisions above | |
22 | * and replace them with the notice and other provisions required by the GPL License. | |
23 | * If you do not delete the provisions above, a recipient may use your version of | |
24 | * this file under either the MPL or the GPL. | |
25 | * | |
26 | */ | |
27 | ||
28 | package ca.uhn.hl7v2.util; | |
29 | ||
30 | import ca.uhn.hl7v2.Location; | |
31 | import ca.uhn.hl7v2.model.*; | |
32 | import ca.uhn.hl7v2.HL7Exception; | |
33 | import java.util.StringTokenizer; | |
34 | ||
35 | import org.slf4j.Logger; | |
36 | import org.slf4j.LoggerFactory; | |
37 | ||
38 | /** | |
39 | * <p> | |
40 | * Wraps a message to provide access to fields using a terse location specification syntax. For | |
41 | * example: | |
42 | * </p> | |
43 | * <p> | |
44 | * <code>terser.set("MSH-9-3", "ADT_A01");</code> <br> | |
45 | * can be used instead of <br> | |
46 | * <code>message.getMSH().getMessageType().getMessageStructure().setValue("ADT_A01"); </code> | |
47 | * </p> | |
48 | * <p> | |
49 | * The syntax of a location spec is as follows: | |
50 | * </p> | |
51 | * <p> | |
52 | * location_spec: | |
53 | * <code>segment_path_spec "-" field ["(" rep ")"] ["-" component ["-" subcomponent]] </code> | |
54 | * </p> | |
55 | * <p> | |
56 | * ... where rep, field, component, and subcomponent are integers (representing, respectively, the | |
57 | * field repetition (starting at 0), and the field number, component number, and subcomponent | |
58 | * numbers (starting at 1). Omitting the rep is equivalent to specifying 0; omitting the component | |
59 | * or subcomponent is equivalent to specifying 1. | |
60 | * </p> | |
61 | * <p> | |
62 | * The syntax for the segment_path_spec is as follows: | |
63 | * </p> | |
64 | * <p> | |
65 | * segment_path_spec: </code> ["/"] (group_spec ["(" rep ")"] "/")* segment_spec ["(" rep | |
66 | * ")"]</code> | |
67 | * </p> | |
68 | * <p> | |
69 | * ... where rep has the same meaning as for fields. | |
70 | * </p> | |
71 | * <p> | |
72 | * A leading "/" indicates that navigation to the | |
73 | * location begins at the root of the message; omitting this indicates that navigation begins at | |
74 | * the current location of the underlying SegmentFinder (see getFinder() -- this allows manual | |
75 | * navigation if desired). The syntax for group_spec is: | |
76 | * </p> | |
77 | * <p> | |
78 | * group_spec: <code>["."] group_name_pattern</code> | |
79 | * </p> | |
80 | * <p> | |
81 | * Here, a . indicates that the group should be searched for (using a SegmentFinder) starting at the | |
82 | * current location in the message. The wildcards "*" and "?" represent any number of arbitrary | |
83 | * characters, and a single arbitrary character, respectively. For example, "M*" and "?S?" match | |
84 | * MSH. The first group with a name that matches the given group_name_pattern will be matched. | |
85 | * </p> | |
86 | * <p> | |
87 | * The segment_spec is analogous to the group_spec. | |
88 | * </p> | |
89 | * <p> | |
90 | * As another example, the following subcomponent in an SIU_S12 message: | |
91 | * <p> | |
92 | * <p> | |
93 | * <code>msg.getSIU_S12_RGSAISNTEAIGNTEAILNTEAIPNTE(1).getSIU_S12_AIGNTE().getAIG().getResourceGroup(1).getIdentifier();</code> | |
94 | * </p> | |
95 | * </p> ... is referenced by all of the following location_spec: </p> | |
96 | * <p> | |
97 | * <code>/SIU_S12_RGSAISNTEAIGNTEAILNTEAIPNTE(1)/SIU_S12_AIGNTE/AIG-5(1)-1 <br> | |
98 | * /*AIG*(1)/SIU_S12_AIGNTE/AIG-5(1)-1 <br> | |
99 | * /*AIG*(1)/.AIG-5(1) <code> | |
100 | * </p> | |
101 | * <p> | |
102 | * The search function only iterates through rep 0 of each group. Thus if rep 0 of the first group | |
103 | * in this example was desired instead of rep 1, the following syntax would also work (since there | |
104 | * is only one AIG segment position in SUI_S12): | |
105 | * </p> | |
106 | * <p> | |
107 | * <code>/.AIG-5(1)</code> | |
108 | * </p> | |
109 | * | |
110 | * @author Bryan Tripp | |
111 | * @author Ryan W. Gross (General Electric Corporation - Healthcare IT). | |
112 | */ | |
113 | public class Terser { | |
114 | ||
115 | private SegmentFinder finder; | |
116 | 5 | private static Logger log = LoggerFactory.getLogger(Terser.class); |
117 | ||
118 | /** Creates a new instance of Terser | |
119 | * | |
120 | * @param message message for which the Terser is created | |
121 | */ | |
122 | 9528 | public Terser(Message message) { |
123 | 9528 | if (message == null) { |
124 | 0 | throw new NullPointerException("Message may not be null"); |
125 | } | |
126 | 9528 | finder = new SegmentFinder(message); |
127 | 9528 | } |
128 | ||
129 | /** | |
130 | * Returns the string value of the Primitive at the given location. | |
131 | * | |
132 | * @param segment the segment from which to get the primitive | |
133 | * @param field the field number (indexed from 1) | |
134 | * @param rep the field repetition (indexed from 0) | |
135 | * @param component the component number (indexed from 1, use 1 for primitive field) | |
136 | * @param subcomponent the subcomponent number (indexed from 1, use 1 for primitive component) | |
137 | * @return string value of the Primitive at the given location | |
138 | * @throws HL7Exception if the primitive could not be obtained | |
139 | */ | |
140 | public static String get(Segment segment, int field, int rep, int component, int subcomponent) throws HL7Exception { | |
141 | 33418 | if (segment == null) { |
142 | 0 | throw new NullPointerException("segment may not be null"); |
143 | } | |
144 | 33418 | if (rep < 0) { |
145 | 0 | throw new IllegalArgumentException("rep must not be negative"); |
146 | } | |
147 | 33418 | if (component < 1) { |
148 | 0 | throw new IllegalArgumentException( |
149 | "component must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); | |
150 | } | |
151 | 33418 | if (subcomponent < 1) { |
152 | 0 | throw new IllegalArgumentException( |
153 | "subcomponent must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); | |
154 | } | |
155 | ||
156 | 33418 | Primitive prim = getPrimitive(segment, field, rep, component, subcomponent); |
157 | 33413 | return prim.getValue(); |
158 | } | |
159 | ||
160 | /** | |
161 | * Sets the string value of the Primitive at the given location. | |
162 | * | |
163 | * @param segment the segment from which to get the primitive | |
164 | * @param field the field number (indexed from 1) | |
165 | * @param rep the field repetition (indexed from 0) | |
166 | * @param component the component number (indexed from 1, use 1 for primitive field) | |
167 | * @param subcomponent the subcomponent number (indexed from 1, use 1 for primitive component) | |
168 | * @param value value to be set | |
169 | * @throws HL7Exception if the value could not be set | |
170 | */ | |
171 | public static void set(Segment segment, int field, int rep, int component, int subcomponent, String value) | |
172 | throws HL7Exception { | |
173 | 23700 | if (segment == null) { |
174 | 0 | throw new NullPointerException("segment may not be null"); |
175 | } | |
176 | 23700 | if (rep < 0) { |
177 | 0 | throw new IllegalArgumentException("rep must not be negative"); |
178 | } | |
179 | 23700 | if (component < 1) { |
180 | 0 | throw new IllegalArgumentException( |
181 | "component must be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); | |
182 | } | |
183 | 23700 | if (subcomponent < 1) { |
184 | 0 | throw new IllegalArgumentException( |
185 | "subcomponent must be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); | |
186 | } | |
187 | ||
188 | 23700 | Primitive prim = getPrimitive(segment, field, rep, component, subcomponent); |
189 | 23700 | prim.setValue(value); |
190 | 23695 | } |
191 | ||
192 | public static void set(Segment segment, Location location, String value) throws HL7Exception { | |
193 | 0 | set(segment, |
194 | 0 | location.getField(), |
195 | 0 | location.getFieldRepetition(), |
196 | 0 | location.getComponent(), |
197 | 0 | location.getSubcomponent(), |
198 | value); | |
199 | 0 | } |
200 | ||
201 | /** | |
202 | * Returns the Primitive object at the given location. | |
203 | */ | |
204 | private static Primitive getPrimitive(Segment segment, int field, int rep, int component, int subcomponent) | |
205 | throws HL7Exception { | |
206 | 57118 | Type type = segment.getField(field, rep); |
207 | 57118 | return getPrimitive(type, component, subcomponent); |
208 | } | |
209 | ||
210 | /** | |
211 | * Returns the Primitive object at the given location in the given field. It is intended that | |
212 | * the given type be at the field level, although extra components will be added blindly if, for | |
213 | * example, you provide a primitive subcomponent instead and specify component or subcomponent > | |
214 | * 1 | |
215 | * | |
216 | * @param type the type from which to get the primitive | |
217 | * @param component the component number (indexed from 1, use 1 for primitive field) | |
218 | * @param subcomponent the subcomponent number (indexed from 1, use 1 for primitive component) | |
219 | * @return the Primitive object at the given location | |
220 | */ | |
221 | public static Primitive getPrimitive(final Type type, final int component, final int subcomponent) { | |
222 | 420457 | if (type == null) { |
223 | 0 | throw new NullPointerException("type may not be null"); |
224 | } | |
225 | 420457 | if (component < 1) { |
226 | 0 | throw new IllegalArgumentException( |
227 | "component must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); | |
228 | } | |
229 | 420457 | if (subcomponent < 1) { |
230 | 0 | throw new IllegalArgumentException( |
231 | "subcomponent must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); | |
232 | } | |
233 | ||
234 | 420457 | Type comp = getComponent(type, component); |
235 | 420452 | if (type instanceof Varies && comp instanceof GenericPrimitive && subcomponent > 1) { |
236 | try { | |
237 | 45 | final Varies varies = (Varies) type; |
238 | 45 | final GenericComposite comp2 = new GenericComposite(type.getMessage()); |
239 | 45 | varies.setData(comp2); |
240 | 45 | comp = getComponent(type, component); |
241 | 0 | } catch (final DataTypeException de) { |
242 | 0 | final String message = "Unexpected exception copying data to generic composite. This is probably a bug within HAPI. " |
243 | 0 | + de.getMessage(); |
244 | 0 | log.error(message, de); |
245 | 0 | throw new Error(message); |
246 | 45 | } |
247 | } | |
248 | 420452 | final Type sub = getComponent(comp, subcomponent); |
249 | 420452 | return getPrimitive(sub); |
250 | } | |
251 | ||
252 | /** | |
253 | * Attempts to extract a Primitive from the given type. If it's a composite, drills down through | |
254 | * first components until a primitive is reached. | |
255 | */ | |
256 | private static Primitive getPrimitive(Type type) { | |
257 | 425993 | if (type instanceof Primitive) { |
258 | 420452 | return (Primitive) type; |
259 | } | |
260 | 5541 | if (type instanceof Composite) { |
261 | try { | |
262 | 4941 | return getPrimitive(((Composite) type).getComponent(0)); |
263 | 0 | } catch (HL7Exception e) { |
264 | 0 | throw new RuntimeException("Internal error: HL7Exception thrown on Composite.getComponent(0)."); |
265 | } | |
266 | } | |
267 | 600 | return getPrimitive(((Varies) type).getData()); |
268 | } | |
269 | ||
270 | /** | |
271 | * Returns the component (or sub-component, as the case may be) at the given index. If it does | |
272 | * not exist, it is added as an "extra component". If comp > 1 is requested from a Varies with | |
273 | * GenericPrimitive data, the data is set to GenericComposite (this avoids the creation of a | |
274 | * chain of ExtraComponents on GenericPrimitives). Components are numbered from 1. | |
275 | */ | |
276 | private static Type getComponent(Type type, int comp) { | |
277 | ||
278 | 1232130 | if (type instanceof Primitive && comp == 1) { |
279 | 360064 | return type; |
280 | } | |
281 | 872066 | if (type instanceof Composite) { |
282 | 859886 | if (comp <= numStandardComponents(type) || type instanceof GenericComposite) { |
283 | try { | |
284 | 859086 | return ((Composite) type).getComponent(comp - 1); |
285 | 0 | } catch (DataTypeException e) { |
286 | 0 | throw new RuntimeException( |
287 | "Internal error: HL7Exception thrown on getComponent(x) where x < # standard components.", | |
288 | e); | |
289 | } | |
290 | } | |
291 | } | |
292 | 12980 | if (Varies.class.isAssignableFrom(type.getClass())) { |
293 | 10885 | Varies v = (Varies) type; |
294 | try { | |
295 | 10885 | if (comp > 1 && GenericPrimitive.class.isAssignableFrom(v.getData().getClass())) |
296 | 1050 | v.setData(new GenericComposite(v.getMessage())); |
297 | 0 | } catch (DataTypeException e) { |
298 | 0 | throw new RuntimeException("Unexpected exception copying data to generic composite: " + e.getMessage(), |
299 | e); | |
300 | 10885 | } |
301 | ||
302 | 10885 | return getComponent(v.getData(), comp); |
303 | } | |
304 | ||
305 | 2095 | return type.getExtraComponents().getComponent(comp - numStandardComponents(type) - 1); |
306 | } | |
307 | ||
308 | /** | |
309 | * <p> | |
310 | * Gets the string value of the field specified. See the class docs for syntax of the location | |
311 | * spec. | |
312 | * </p> | |
313 | * <p> | |
314 | * If a repetition is omitted for a repeating segment or field, the first rep is used. If the | |
315 | * component or subcomponent is not specified for a composite field, the first component is used | |
316 | * (this allows one to write code that will work with later versions of the HL7 standard). | |
317 | * | |
318 | * @param spec field specification | |
319 | * @return string value of the specified field | |
320 | * @throws HL7Exception if the primitive could not be obtained | |
321 | */ | |
322 | public String get(String spec) throws HL7Exception { | |
323 | 19605 | StringTokenizer tok = new StringTokenizer(spec, "-", false); |
324 | 19605 | Segment segment = getSegment(tok.nextToken()); |
325 | ||
326 | 19595 | int[] ind = getIndices(spec); |
327 | 19595 | return get(segment, ind[0], ind[1], ind[2], ind[3]); |
328 | } | |
329 | ||
330 | /** | |
331 | * Returns the segment specified in the given segment_path_spec. | |
332 | * | |
333 | * @param segSpec segment specification | |
334 | * @return the segment specified | |
335 | * @throws HL7Exception if the segment could not be obtained | |
336 | */ | |
337 | public Segment getSegment(String segSpec) throws HL7Exception { | |
338 | 19725 | Segment seg = null; |
339 | ||
340 | 19725 | if (segSpec.startsWith("/")) { |
341 | 7531 | getFinder().reset(); |
342 | } | |
343 | ||
344 | 19725 | StringTokenizer tok = new StringTokenizer(segSpec, "/", false); |
345 | 19725 | SegmentFinder finder = getFinder(); |
346 | 40280 | while (tok.hasMoreTokens()) { |
347 | 20565 | String pathSpec = tok.nextToken(); |
348 | 20565 | Terser.PathSpec ps = parsePathSpec(pathSpec); |
349 | 20565 | ps.isGroup = tok.hasMoreTokens(); |
350 | 20565 | if (ps.isGroup) { |
351 | 840 | Group g = ps.find ? |
352 | 430 | finder.findGroup(ps.pattern, ps.rep) : |
353 | 410 | finder.getGroup(ps.pattern, ps.rep); |
354 | 840 | finder = new SegmentFinder(g); |
355 | 840 | } else { |
356 | 19725 | seg = ps.find ? |
357 | 978 | finder.findSegment(ps.pattern, ps.rep) : |
358 | 18747 | finder.getSegment(ps.pattern, ps.rep); |
359 | } | |
360 | 20555 | } |
361 | ||
362 | 19715 | return seg; |
363 | } | |
364 | ||
365 | /** Gets path information from a path spec. */ | |
366 | private PathSpec parsePathSpec(String spec) throws HL7Exception { | |
367 | 20565 | PathSpec ps = new PathSpec(); |
368 | ||
369 | 20565 | if (spec.startsWith(".")) { |
370 | 1408 | ps.find = true; |
371 | 1408 | spec = spec.substring(1); |
372 | } else { | |
373 | 19157 | ps.find = false; |
374 | } | |
375 | ||
376 | 20565 | if (spec.length() == 0) { |
377 | 0 | throw new HL7Exception("Invalid path (some path element is either empty or contains only a dot)"); |
378 | } | |
379 | 20565 | StringTokenizer tok = new StringTokenizer(spec, "()", false); |
380 | 20565 | ps.pattern = tok.nextToken(); |
381 | 20565 | if (tok.hasMoreTokens()) { |
382 | 640 | String repString = tok.nextToken(); |
383 | try { | |
384 | 640 | ps.rep = Integer.parseInt(repString); |
385 | 0 | } catch (NumberFormatException e) { |
386 | 0 | throw new HL7Exception(repString + " is not a valid rep #"); |
387 | 640 | } |
388 | 640 | } else { |
389 | 19925 | ps.rep = 0; |
390 | } | |
391 | 20565 | return ps; |
392 | } | |
393 | ||
394 | /** | |
395 | * Given a Terser path, returns an array containing field num, field rep, component, and | |
396 | * subcomponent. | |
397 | * | |
398 | * @param spec field specification | |
399 | * @return an array containing field num, field rep, component, and subcomponent | |
400 | * @throws HL7Exception if the field does not exist | |
401 | */ | |
402 | public static int[] getIndices(String spec) throws HL7Exception { | |
403 | 20420 | StringTokenizer tok = new StringTokenizer(spec, "-", false); |
404 | 20420 | tok.nextToken(); // skip over segment |
405 | 20420 | if (!tok.hasMoreTokens()) |
406 | 0 | throw new HL7Exception("Must specify field in spec " + spec); |
407 | try { | |
408 | 20420 | StringTokenizer fieldSpec = new StringTokenizer(tok.nextToken(), "()", false); |
409 | 20420 | int fieldNum = Integer.parseInt(fieldSpec.nextToken()); |
410 | 20420 | int fieldRep = fieldSpec.hasMoreTokens() ? |
411 | 710 | Integer.parseInt(fieldSpec.nextToken()) : 0; |
412 | 20420 | int component = tok.hasMoreTokens() ? |
413 | 15915 | Integer.parseInt(tok.nextToken()) : 1; |
414 | 20420 | int subcomponent = tok.hasMoreTokens() ? |
415 | 60 | Integer.parseInt(tok.nextToken()) : 1; |
416 | 20420 | return new int[] { fieldNum, fieldRep, component, subcomponent }; |
417 | 0 | } catch (NumberFormatException e) { |
418 | 0 | throw new HL7Exception("Invalid integer in spec " + spec); |
419 | } | |
420 | } | |
421 | ||
422 | ||
423 | /** | |
424 | * Sets the string value of the field specified. See class docs for location spec syntax. | |
425 | * | |
426 | * @param spec primitive path specification | |
427 | * @param value value to be set | |
428 | * @throws HL7Exception if the primitive does not exist | |
429 | */ | |
430 | public void set(String spec, String value) throws HL7Exception { | |
431 | 95 | StringTokenizer tok = new StringTokenizer(spec, "-", false); |
432 | 95 | Segment segment = getSegment(tok.nextToken()); |
433 | ||
434 | 95 | int[] ind = getIndices(spec); |
435 | 190 | log.trace("Setting {} seg: {} ind: {} {} {} {}", new Object[] { spec, segment.getName(), ind[0], ind[1], |
436 | 95 | ind[2], ind[3] }); |
437 | 95 | set(segment, ind[0], ind[1], ind[2], ind[3], value); |
438 | 90 | } |
439 | ||
440 | /** | |
441 | * Returns the number of sub-components in the specified component, i.e. the number of standard | |
442 | * sub-components (e.g. 6 for CE) plus any extra components that that have been added at | |
443 | * runtime. | |
444 | * | |
445 | * @param type composite type | |
446 | * @param component numbered from 1 | |
447 | * @return number of sub-components in the specified component | |
448 | */ | |
449 | public static int numSubComponents(Type type, int component) { | |
450 | 420013 | if (component == 1 && Primitive.class.isAssignableFrom(type.getClass())) { |
451 | // note that getComponent(primitive, 1) below returns the primitive | |
452 | // itself -- if we do numComponents on it, we'll end up with the | |
453 | // number of components in the field, not the number of subcomponents | |
454 | 39722 | return 1; |
455 | } | |
456 | 380291 | Type comp = getComponent(type, component); |
457 | 380291 | return numComponents(comp); |
458 | } | |
459 | ||
460 | /** | |
461 | * Returns the number of components in the given type, i.e. the number of standard components | |
462 | * (e.g. 6 for CE) plus any extra components that have been added at runtime. | |
463 | * | |
464 | * @param t composite type | |
465 | * @return the number of components in the given type | |
466 | */ | |
467 | public static int numComponents(Type t) { | |
468 | 595108 | if (!(t instanceof Varies)) { |
469 | 591978 | return numStandardComponents(t) + t.getExtraComponents().numComponents(); |
470 | } | |
471 | 3130 | return numComponents(((Varies) t).getData()); |
472 | } | |
473 | ||
474 | private static int numStandardComponents(Type t) { | |
475 | 1453959 | if (t instanceof Composite) { |
476 | 1178841 | return ((Composite) t).getComponents().length; |
477 | } | |
478 | 275118 | if (t instanceof Varies) { |
479 | 0 | return numStandardComponents(((Varies) t).getData()); |
480 | } | |
481 | 275118 | return 1; |
482 | } | |
483 | ||
484 | /** | |
485 | * Returns the segment finder used by this Terser. Navigating the finder will influence the | |
486 | * behaviour of the Terser accordingly. Ie when the full path of the segment is not specified | |
487 | * the segment will be sought beginning at the current location of the finder. | |
488 | * | |
489 | * @return the segment finder used by this Terser | |
490 | */ | |
491 | public SegmentFinder getFinder() { | |
492 | 27256 | return finder; |
493 | } | |
494 | ||
495 | /** Struct for information about a step in a segment path. */ | |
496 | 41130 | private static class PathSpec { |
497 | public String pattern; | |
498 | public boolean isGroup; | |
499 | public boolean find; | |
500 | public int rep; | |
501 | } | |
502 | } |