| 1 | |
|
| 2 | |
|
| 3 | |
|
| 4 | |
|
| 5 | |
|
| 6 | |
|
| 7 | |
|
| 8 | |
|
| 9 | |
|
| 10 | |
|
| 11 | |
|
| 12 | |
|
| 13 | |
|
| 14 | |
|
| 15 | |
|
| 16 | |
|
| 17 | |
|
| 18 | |
|
| 19 | |
|
| 20 | |
|
| 21 | |
|
| 22 | |
|
| 23 | |
|
| 24 | |
|
| 25 | |
|
| 26 | |
|
| 27 | |
|
| 28 | |
package ca.uhn.hl7v2.conf.parser; |
| 29 | |
|
| 30 | |
import java.io.BufferedReader; |
| 31 | |
import java.io.File; |
| 32 | |
import java.io.FileNotFoundException; |
| 33 | |
import java.io.FileReader; |
| 34 | |
import java.io.IOException; |
| 35 | |
import java.io.InputStream; |
| 36 | |
|
| 37 | |
import org.slf4j.Logger; |
| 38 | |
import org.slf4j.LoggerFactory; |
| 39 | |
import org.w3c.dom.DOMError; |
| 40 | |
import org.w3c.dom.DOMErrorHandler; |
| 41 | |
import org.w3c.dom.Document; |
| 42 | |
import org.w3c.dom.Element; |
| 43 | |
import org.w3c.dom.Node; |
| 44 | |
import org.w3c.dom.NodeList; |
| 45 | |
|
| 46 | |
import ca.uhn.hl7v2.conf.ProfileException; |
| 47 | |
import ca.uhn.hl7v2.conf.spec.MetaData; |
| 48 | |
import ca.uhn.hl7v2.conf.spec.RuntimeProfile; |
| 49 | |
import ca.uhn.hl7v2.conf.spec.message.AbstractComponent; |
| 50 | |
import ca.uhn.hl7v2.conf.spec.message.AbstractSegmentContainer; |
| 51 | |
import ca.uhn.hl7v2.conf.spec.message.Component; |
| 52 | |
import ca.uhn.hl7v2.conf.spec.message.DataValue; |
| 53 | |
import ca.uhn.hl7v2.conf.spec.message.Field; |
| 54 | |
import ca.uhn.hl7v2.conf.spec.message.ProfileStructure; |
| 55 | |
import ca.uhn.hl7v2.conf.spec.message.Seg; |
| 56 | |
import ca.uhn.hl7v2.conf.spec.message.SegGroup; |
| 57 | |
import ca.uhn.hl7v2.conf.spec.message.StaticDef; |
| 58 | |
import ca.uhn.hl7v2.conf.spec.message.SubComponent; |
| 59 | |
import ca.uhn.hl7v2.util.XMLUtils; |
| 60 | |
|
| 61 | |
|
| 62 | |
|
| 63 | |
|
| 64 | |
|
| 65 | |
|
| 66 | |
|
| 67 | |
|
| 68 | |
|
| 69 | |
|
| 70 | |
|
| 71 | |
|
| 72 | |
|
| 73 | |
|
| 74 | |
|
| 75 | |
|
| 76 | |
|
| 77 | |
|
| 78 | |
|
| 79 | |
|
| 80 | |
|
| 81 | |
|
| 82 | |
|
| 83 | |
|
| 84 | |
|
| 85 | |
|
| 86 | |
|
| 87 | |
|
| 88 | |
|
| 89 | 0 | public class ProfileParser { |
| 90 | |
|
| 91 | |
private static final String PROFILE_XSD = "ca/uhn/hl7v2/conf/parser/message_profile.xsd"; |
| 92 | |
|
| 93 | 5 | private static final Logger log = LoggerFactory.getLogger(ProfileParser.class); |
| 94 | |
|
| 95 | |
private boolean alwaysValidate; |
| 96 | |
private DOMErrorHandler errorHandler; |
| 97 | |
|
| 98 | |
|
| 99 | |
|
| 100 | |
|
| 101 | |
|
| 102 | |
|
| 103 | |
|
| 104 | 75 | public ProfileParser(boolean alwaysValidate) { |
| 105 | |
|
| 106 | 75 | this.alwaysValidate = alwaysValidate; |
| 107 | 75 | this.errorHandler = new DOMErrorHandler() { |
| 108 | |
|
| 109 | |
public boolean handleError(DOMError error) { |
| 110 | 0 | if (error.getSeverity() == DOMError.SEVERITY_WARNING) { |
| 111 | 0 | log.warn("Warning: {}", error.getMessage()); |
| 112 | |
} else { |
| 113 | 0 | throw new RuntimeException((Exception) error.getRelatedException()); |
| 114 | |
} |
| 115 | 0 | return true; |
| 116 | |
} |
| 117 | |
|
| 118 | |
}; |
| 119 | 75 | } |
| 120 | |
|
| 121 | |
|
| 122 | |
|
| 123 | |
|
| 124 | |
|
| 125 | |
|
| 126 | |
|
| 127 | |
|
| 128 | |
|
| 129 | |
|
| 130 | |
|
| 131 | |
|
| 132 | |
|
| 133 | |
public RuntimeProfile parseClasspath(String classPath) throws ProfileException, IOException { |
| 134 | |
|
| 135 | 5 | InputStream stream = Thread.currentThread().getContextClassLoader() |
| 136 | 5 | .getResourceAsStream(classPath); |
| 137 | 5 | if (stream == null) { |
| 138 | 0 | throw new FileNotFoundException(classPath); |
| 139 | |
} |
| 140 | |
|
| 141 | 5 | StringBuffer profileString = new StringBuffer(); |
| 142 | 5 | byte[] buffer = new byte[1000]; |
| 143 | |
int bytesRead; |
| 144 | 3280 | while ((bytesRead = stream.read(buffer)) > 0) { |
| 145 | 3275 | profileString.append(new String(buffer, 0, bytesRead)); |
| 146 | |
} |
| 147 | |
|
| 148 | 5 | RuntimeProfile profile = new RuntimeProfile(); |
| 149 | 5 | Document doc = parseIntoDOM(profileString.toString()); |
| 150 | |
|
| 151 | 5 | Element root = doc.getDocumentElement(); |
| 152 | 5 | profile.setHL7Version(root.getAttribute("HL7Version")); |
| 153 | |
|
| 154 | |
|
| 155 | 5 | NodeList nl = root.getElementsByTagName("HL7v2xStaticDef"); |
| 156 | 5 | Element staticDef = (Element) nl.item(0); |
| 157 | 5 | StaticDef sd = parseStaticProfile(staticDef); |
| 158 | 5 | profile.setMessage(sd); |
| 159 | 5 | return profile; |
| 160 | |
} |
| 161 | |
|
| 162 | |
|
| 163 | |
|
| 164 | |
|
| 165 | |
public RuntimeProfile parse(String profileString) throws ProfileException { |
| 166 | 70 | RuntimeProfile profile = new RuntimeProfile(); |
| 167 | 70 | Document doc = parseIntoDOM(profileString); |
| 168 | |
|
| 169 | 70 | Element root = doc.getDocumentElement(); |
| 170 | 70 | profile.setHL7Version(root.getAttribute("HL7Version")); |
| 171 | |
|
| 172 | 70 | NodeList metadataList = root.getElementsByTagName("MetaData"); |
| 173 | 70 | if (metadataList.getLength() > 0) { |
| 174 | 70 | Element metadata = (Element) metadataList.item(0); |
| 175 | 70 | String name = metadata.getAttribute("Name"); |
| 176 | 70 | profile.setName(name); |
| 177 | |
} |
| 178 | |
|
| 179 | |
|
| 180 | 70 | NodeList nl = root.getElementsByTagName("HL7v2xStaticDef"); |
| 181 | 70 | Element staticDef = (Element) nl.item(0); |
| 182 | 70 | StaticDef sd = parseStaticProfile(staticDef); |
| 183 | 70 | profile.setMessage(sd); |
| 184 | 70 | return profile; |
| 185 | |
} |
| 186 | |
|
| 187 | |
private StaticDef parseStaticProfile(Element elem) throws ProfileException { |
| 188 | 75 | StaticDef message = new StaticDef(); |
| 189 | 75 | message.setMsgType(elem.getAttribute("MsgType")); |
| 190 | 75 | message.setEventType(elem.getAttribute("EventType")); |
| 191 | 75 | message.setMsgStructID(elem.getAttribute("MsgStructID")); |
| 192 | 75 | message.setOrderControl(elem.getAttribute("OrderControl")); |
| 193 | 75 | message.setEventDesc(elem.getAttribute("EventDesc")); |
| 194 | 75 | message.setIdentifier(elem.getAttribute("Identifier")); |
| 195 | 75 | message.setRole(elem.getAttribute("Role")); |
| 196 | |
|
| 197 | 75 | Element md = getFirstElementByTagName("MetaData", elem); |
| 198 | 75 | if (md != null) |
| 199 | 75 | message.setMetaData(parseMetaData(md)); |
| 200 | |
|
| 201 | 75 | message.setImpNote(getValueOfFirstElement("ImpNote", elem)); |
| 202 | 75 | message.setDescription(getValueOfFirstElement("Description", elem)); |
| 203 | 75 | message.setReference(getValueOfFirstElement("Reference", elem)); |
| 204 | |
|
| 205 | 75 | parseChildren(message, elem); |
| 206 | 75 | return message; |
| 207 | |
} |
| 208 | |
|
| 209 | |
|
| 210 | |
private MetaData parseMetaData(Element elem) { |
| 211 | 75 | log.debug("ProfileParser.parseMetaData() has been called ... note that this method does nothing."); |
| 212 | 75 | return null; |
| 213 | |
} |
| 214 | |
|
| 215 | |
|
| 216 | |
|
| 217 | |
|
| 218 | |
private void parseChildren(AbstractSegmentContainer parent, Element elem) |
| 219 | |
throws ProfileException { |
| 220 | 165 | int childIndex = 1; |
| 221 | 165 | NodeList children = elem.getChildNodes(); |
| 222 | 1560 | for (int i = 0; i < children.getLength(); i++) { |
| 223 | 1395 | Node n = children.item(i); |
| 224 | 1395 | if (n.getNodeType() == Node.ELEMENT_NODE) { |
| 225 | 615 | Element child = (Element) n; |
| 226 | 615 | if (child.getNodeName().equalsIgnoreCase("SegGroup")) { |
| 227 | 90 | SegGroup group = parseSegmentGroupProfile(child); |
| 228 | 90 | parent.setChild(childIndex++, group); |
| 229 | 90 | } else if (child.getNodeName().equalsIgnoreCase("Segment")) { |
| 230 | 450 | Seg segment = parseSegmentProfile(child); |
| 231 | 450 | parent.setChild(childIndex++, segment); |
| 232 | |
} |
| 233 | |
} |
| 234 | |
} |
| 235 | 165 | } |
| 236 | |
|
| 237 | |
|
| 238 | |
private SegGroup parseSegmentGroupProfile(Element elem) throws ProfileException { |
| 239 | 90 | SegGroup group = new SegGroup(); |
| 240 | 90 | log.debug("Parsing segment group profile: " + elem.getAttribute("Name")); |
| 241 | |
|
| 242 | 90 | parseProfileStuctureData(group, elem); |
| 243 | |
|
| 244 | 90 | parseChildren(group, elem); |
| 245 | 90 | return group; |
| 246 | |
} |
| 247 | |
|
| 248 | |
|
| 249 | |
private Seg parseSegmentProfile(Element elem) throws ProfileException { |
| 250 | 450 | Seg segment = new Seg(); |
| 251 | 450 | log.debug("Parsing segment profile: " + elem.getAttribute("Name")); |
| 252 | |
|
| 253 | 450 | parseProfileStuctureData(segment, elem); |
| 254 | |
|
| 255 | 450 | int childIndex = 1; |
| 256 | 450 | NodeList children = elem.getChildNodes(); |
| 257 | 15660 | for (int i = 0; i < children.getLength(); i++) { |
| 258 | 15210 | Node n = children.item(i); |
| 259 | 15210 | if (n.getNodeType() == Node.ELEMENT_NODE) { |
| 260 | 7375 | Element child = (Element) n; |
| 261 | 7375 | if (child.getNodeName().equalsIgnoreCase("Field")) { |
| 262 | 7370 | Field field = parseFieldProfile(child); |
| 263 | 7370 | segment.setField(childIndex++, field); |
| 264 | |
} |
| 265 | |
} |
| 266 | |
} |
| 267 | |
|
| 268 | 450 | return segment; |
| 269 | |
} |
| 270 | |
|
| 271 | |
|
| 272 | |
private void parseProfileStuctureData(ProfileStructure struct, Element elem) |
| 273 | |
throws ProfileException { |
| 274 | 540 | struct.setName(elem.getAttribute("Name")); |
| 275 | 540 | struct.setLongName(elem.getAttribute("LongName")); |
| 276 | 540 | struct.setUsage(elem.getAttribute("Usage")); |
| 277 | 540 | String min = elem.getAttribute("Min"); |
| 278 | 540 | String max = elem.getAttribute("Max"); |
| 279 | |
try { |
| 280 | 540 | struct.setMin(Short.parseShort(min)); |
| 281 | 540 | if (max.indexOf('*') >= 0) { |
| 282 | 115 | struct.setMax((short) -1); |
| 283 | |
} else { |
| 284 | 425 | struct.setMax(Short.parseShort(max)); |
| 285 | |
} |
| 286 | 0 | } catch (NumberFormatException e) { |
| 287 | 0 | throw new ProfileException("Min and max must be short integers: " + min + ", " + max, e); |
| 288 | 540 | } |
| 289 | |
|
| 290 | 540 | struct.setImpNote(getValueOfFirstElement("ImpNote", elem)); |
| 291 | 540 | struct.setDescription(getValueOfFirstElement("Description", elem)); |
| 292 | 540 | struct.setReference(getValueOfFirstElement("Reference", elem)); |
| 293 | 540 | struct.setPredicate(getValueOfFirstElement("Predicate", elem)); |
| 294 | 540 | } |
| 295 | |
|
| 296 | |
|
| 297 | |
private Field parseFieldProfile(Element elem) throws ProfileException { |
| 298 | 7370 | Field field = new Field(); |
| 299 | 7370 | log.debug(" Parsing field profile: " + elem.getAttribute("Name")); |
| 300 | |
|
| 301 | 7370 | field.setUsage(elem.getAttribute("Usage")); |
| 302 | 7370 | String itemNo = elem.getAttribute("ItemNo"); |
| 303 | 7370 | String min = elem.getAttribute("Min"); |
| 304 | 7370 | String max = elem.getAttribute("Max"); |
| 305 | |
|
| 306 | |
try { |
| 307 | 7370 | if (itemNo.length() > 0) { |
| 308 | 7230 | field.setItemNo(Short.parseShort(itemNo)); |
| 309 | |
} |
| 310 | 0 | } catch (NumberFormatException e) { |
| 311 | 0 | throw new ProfileException("Invalid ItemNo: " + itemNo + "( for name " |
| 312 | 0 | + elem.getAttribute("Name") + ")", e); |
| 313 | 7370 | } |
| 314 | |
|
| 315 | |
try { |
| 316 | 7370 | field.setMin(Short.parseShort(min)); |
| 317 | 7370 | if (max.indexOf('*') >= 0) { |
| 318 | 1770 | field.setMax((short) -1); |
| 319 | |
} else { |
| 320 | 5600 | field.setMax(Short.parseShort(max)); |
| 321 | |
} |
| 322 | 0 | } catch (NumberFormatException e) { |
| 323 | 0 | throw new ProfileException("Min and max must be short integers: " + min + ", " + max, e); |
| 324 | 7370 | } |
| 325 | |
|
| 326 | 7370 | parseAbstractComponentData(field, elem); |
| 327 | |
|
| 328 | 7370 | int childIndex = 1; |
| 329 | 7370 | NodeList children = elem.getChildNodes(); |
| 330 | 82050 | for (int i = 0; i < children.getLength(); i++) { |
| 331 | 74680 | Node n = children.item(i); |
| 332 | 74680 | if (n.getNodeType() == Node.ELEMENT_NODE) { |
| 333 | 33655 | Element child = (Element) n; |
| 334 | 33655 | if (child.getNodeName().equalsIgnoreCase("Component")) { |
| 335 | 26385 | Component comp = (Component) parseComponentProfile(child, false); |
| 336 | 26385 | field.setComponent(childIndex++, comp); |
| 337 | |
} |
| 338 | |
} |
| 339 | |
} |
| 340 | |
|
| 341 | 7370 | return field; |
| 342 | |
} |
| 343 | |
|
| 344 | |
|
| 345 | |
private AbstractComponent<?> parseComponentProfile(Element elem, boolean isSubComponent) |
| 346 | |
throws ProfileException { |
| 347 | 48155 | AbstractComponent<?> comp = null; |
| 348 | 48155 | if (isSubComponent) { |
| 349 | 21770 | log.debug(" Parsing subcomp profile: " + elem.getAttribute("Name")); |
| 350 | 21770 | comp = new SubComponent(); |
| 351 | |
} else { |
| 352 | 26385 | log.debug(" Parsing comp profile: " + elem.getAttribute("Name")); |
| 353 | 26385 | comp = new Component(); |
| 354 | |
|
| 355 | 26385 | int childIndex = 1; |
| 356 | 26385 | NodeList children = elem.getChildNodes(); |
| 357 | 102140 | for (int i = 0; i < children.getLength(); i++) { |
| 358 | 75755 | Node n = children.item(i); |
| 359 | 75755 | if (n.getNodeType() == Node.ELEMENT_NODE) { |
| 360 | 24685 | Element child = (Element) n; |
| 361 | 24685 | if (child.getNodeName().equalsIgnoreCase("SubComponent")) { |
| 362 | 21770 | SubComponent subcomp = (SubComponent) parseComponentProfile(child, true); |
| 363 | 21770 | ((Component) comp).setSubComponent(childIndex++, subcomp); |
| 364 | |
} |
| 365 | |
} |
| 366 | |
} |
| 367 | |
} |
| 368 | |
|
| 369 | 48155 | parseAbstractComponentData(comp, elem); |
| 370 | |
|
| 371 | 48155 | return comp; |
| 372 | |
} |
| 373 | |
|
| 374 | |
|
| 375 | |
|
| 376 | |
|
| 377 | |
private void parseAbstractComponentData(AbstractComponent<?> comp, Element elem) |
| 378 | |
throws ProfileException { |
| 379 | 55525 | comp.setName(elem.getAttribute("Name")); |
| 380 | 55525 | comp.setUsage(elem.getAttribute("Usage")); |
| 381 | 55525 | comp.setDatatype(elem.getAttribute("Datatype")); |
| 382 | 55525 | String length = elem.getAttribute("Length"); |
| 383 | 55525 | if (length != null && length.length() > 0) { |
| 384 | |
try { |
| 385 | 55120 | comp.setLength(Long.parseLong(length)); |
| 386 | 0 | } catch (NumberFormatException e) { |
| 387 | 0 | throw new ProfileException("Length must be a long integer: " + length, e); |
| 388 | 55120 | } |
| 389 | |
} |
| 390 | 55525 | comp.setConstantValue(elem.getAttribute("ConstantValue")); |
| 391 | 55525 | String table = elem.getAttribute("Table"); |
| 392 | 55525 | if (table != null && table.length() > 0) { |
| 393 | |
try { |
| 394 | 20280 | comp.setTable(table); |
| 395 | 0 | } catch (NumberFormatException e) { |
| 396 | 0 | throw new ProfileException("Table must be a short integer: " + table, e); |
| 397 | 20280 | } |
| 398 | |
} |
| 399 | |
|
| 400 | 55525 | comp.setImpNote(getValueOfFirstElement("ImpNote", elem)); |
| 401 | 55525 | comp.setDescription(getValueOfFirstElement("Description", elem)); |
| 402 | 55525 | comp.setReference(getValueOfFirstElement("Reference", elem)); |
| 403 | 55525 | comp.setPredicate(getValueOfFirstElement("Predicate", elem)); |
| 404 | |
|
| 405 | 55525 | int dataValIndex = 0; |
| 406 | 55525 | NodeList children = elem.getChildNodes(); |
| 407 | 239160 | for (int i = 0; i < children.getLength(); i++) { |
| 408 | 183635 | Node n = children.item(i); |
| 409 | 183635 | if (n.getNodeType() == Node.ELEMENT_NODE) { |
| 410 | 64055 | Element child = (Element) n; |
| 411 | 64055 | if (child.getNodeName().equalsIgnoreCase("DataValues")) { |
| 412 | 2910 | DataValue val = new DataValue(); |
| 413 | 2910 | val.setExValue(child.getAttribute("ExValue")); |
| 414 | 2910 | comp.setDataValues(dataValIndex++, val); |
| 415 | |
} |
| 416 | |
} |
| 417 | |
} |
| 418 | |
|
| 419 | 55525 | } |
| 420 | |
|
| 421 | |
|
| 422 | |
private Document parseIntoDOM(String profileString) throws ProfileException { |
| 423 | |
try { |
| 424 | 75 | Document doc = XMLUtils.parse(profileString, true); |
| 425 | 75 | if (alwaysValidate) |
| 426 | 10 | XMLUtils.validate(doc, PROFILE_XSD, errorHandler); |
| 427 | 75 | return doc; |
| 428 | 0 | } catch (Exception e) { |
| 429 | 0 | throw new ProfileException("Exception parsing message profile: " + e.getMessage(), e); |
| 430 | |
} |
| 431 | |
} |
| 432 | |
|
| 433 | |
|
| 434 | |
|
| 435 | |
|
| 436 | |
|
| 437 | |
private Element getFirstElementByTagName(String name, Element parent) { |
| 438 | 224560 | NodeList nl = parent.getElementsByTagName(name); |
| 439 | 224560 | Element ret = null; |
| 440 | 224560 | if (nl.getLength() > 0) { |
| 441 | 18705 | ret = (Element) nl.item(0); |
| 442 | |
} |
| 443 | 224560 | return ret; |
| 444 | |
} |
| 445 | |
|
| 446 | |
|
| 447 | |
|
| 448 | |
|
| 449 | |
private String getValueOfFirstElement(String name, Element parent) throws ProfileException { |
| 450 | 224485 | Element el = getFirstElementByTagName(name, parent); |
| 451 | 224485 | String val = null; |
| 452 | 224485 | if (el != null) { |
| 453 | |
try { |
| 454 | 18630 | Node n = el.getFirstChild(); |
| 455 | 18630 | if (n.getNodeType() == Node.TEXT_NODE) { |
| 456 | 18630 | val = n.getNodeValue(); |
| 457 | |
} |
| 458 | 0 | } catch (Exception e) { |
| 459 | 0 | throw new ProfileException("Unable to get value of node " + name, e); |
| 460 | 18630 | } |
| 461 | |
} |
| 462 | 224485 | return val; |
| 463 | |
} |
| 464 | |
|
| 465 | |
public static void main(String args[]) { |
| 466 | |
|
| 467 | 0 | if (args.length != 1) { |
| 468 | 0 | System.out.println("Usage: ProfileParser profile_file"); |
| 469 | 0 | System.exit(1); |
| 470 | |
} |
| 471 | |
|
| 472 | |
try { |
| 473 | |
|
| 474 | |
|
| 475 | 0 | File f = new File(args[0]); |
| 476 | |
@SuppressWarnings("resource") |
| 477 | 0 | BufferedReader in = new BufferedReader(new FileReader(f)); |
| 478 | 0 | char[] cbuf = new char[(int) f.length()]; |
| 479 | 0 | in.read(cbuf, 0, (int) f.length()); |
| 480 | 0 | String xml = String.valueOf(cbuf); |
| 481 | |
|
| 482 | |
|
| 483 | 0 | ProfileParser pp = new ProfileParser(true); |
| 484 | 0 | pp.parse(xml); |
| 485 | 0 | } catch (Exception e) { |
| 486 | 0 | e.printStackTrace(); |
| 487 | 0 | } |
| 488 | 0 | } |
| 489 | |
|
| 490 | |
} |